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Posts
Fine tune the best clustering resolution for scRNAseq data: trying out callback
Downstream of bulk RNAseq: read in salmon output using tximport and then DESeq2
How to preprocess GEO bulk RNAseq data with salmon
Do you really understand log2Fold change in single-cell RNAseq data?
Hidden skills beyond programming for computational biology
Publications
A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer
Embracing the command line: my unexpected career in computational biology
Monkeybread: A Python toolkit for the analysis of cellular niches in single-cell resolution spatial transcriptomics data
The tidyomics ecosystem: Enhancing omic data analyses
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA
Talks
Single-cell RNAseq data integration: methods and challenges
workshop: Charting human biology using AI for Precision Health & Precision Medicine
Navigating Omics Data Analysis Challenges in Biotech
Drug Discovery Biology Strategy Meeting
Panel Discussion on GPT & Drug Discovery: Rise of Generative Models
Projects
CANCER IMMUNOLOGIC DATA COMMONS(CIDC)
Snakemake pipeline post-processing scATAC-seq
Evaluating single cell RNAseq cluster stability
Snakemake Pipelines
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