Recent Publications

. Fast analysis of scATAC-seq data using a predefined set of genomic regions. In F1000, 2020.


. KRAS-IRF2 Axis Drives Immune Suppression and Immune Therapy Resistance in Colorectal Cancer. In Cancer Cell, 2019.


. The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations. In Cancer Cell, 2018.


. TumorFusions: an integrative resource for cancer-associated transcript fusions. In Nucleic Acids Research, 2018.


. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. In Cancer Cell, 2017.


. Systematic analysis of telomere length and somatic alterations in 31 cancer types. In Nature Genetics, 2017.


. A Molecular Take on Malignant Rhabdoid Tumors. In Trends in Cancer, 2016.


. TRIM29 Suppresses TWIST1 and Invasive Breast Cancer Behavior. In Cancer Research, 2014.


Talks & Teachings

Tools and tricks for a data scientist
Mar 9, 2020 11:00 AM
Harvard FAS informatics nanocourse
Aug 19, 2019 10:40 AM
Reproducible research in bioinformatics
Mar 28, 2019 2:30 PM
2018 Next-Gen Sequence Analysis Workshop
Jul 10, 2018 10:00 AM
GS01 1143 Introduction to Bioinformatics course
Nov 2, 2017 9:00 AM
University of Miami 2-day Software Carpentry workshop
Apr 2, 2015 9:00 AM

Recent Posts


Snakemake pipeline post-processing scATAC-seq

A snakemake pipeline to split scATACseq bam by cluster, make bigwig tracks, call peaks and recount

Evaluating single cell RNAseq cluster stability

An R package for evaluating and visualizing scRNAseq cluster stability

Snakemake Pipelines

Snakemake pipelines for processing high-throughput sequencing data


Find my CV in PDF here.