Recent Publications

. KRAS-IRF2 Axis Drives Immune Suppression and Immune Therapy Resistance in Colorectal Cancer. In Cancer Cell, 2019.

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. The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations. In Cancer Cell, 2018.

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. TumorFusions: an integrative resource for cancer-associated transcript fusions. In Nucleic Acids Research, 2018.

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. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma. In Cancer Cell, 2017.

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. Systematic analysis of telomere length and somatic alterations in 31 cancer types. In Nature Genetics, 2017.

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. A Molecular Take on Malignant Rhabdoid Tumors. In Trends in Cancer, 2016.

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. TRIM29 Suppresses TWIST1 and Invasive Breast Cancer Behavior. In Cancer Research, 2014.

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Talks & Teachings

Harvard FAS informatics nanocourse
Aug 19, 2019 10:40 AM
Reproducible research in bioinformatics
Mar 28, 2019 2:30 PM
2018 Next-Gen Sequence Analysis Workshop
Jul 10, 2018 10:00 AM
GS01 1143 Introduction to Bioinformatics course
Nov 2, 2017 9:00 AM
University of Miami 2-day Software Carpentry workshop
Apr 2, 2015 9:00 AM

Projects

Snakemake pipeline post-processing scATAC-seq

A snakemake pipeline to split scATACseq bam by cluster, make bigwig tracks, call peaks and recount

Evaluating single cell RNAseq cluster stability

An R package for evaluating and visualizing scRNAseq cluster stability

Snakemake Pipelines

Snakemake pipelines for processing high-throughput sequencing data

CV

Find my CV in PDF here.

Contact